Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015835371.1_cds_XP_016505916.1_19199
CDS Infomation

[gene=LOC107823741] [db_xref=GeneID:107823741] [protein=pentatricopeptide repeat-containing protein At5g10690-like isoform X2] [protein_id=XP_016505916.1] [location=join(24221..24508,24792..24974,25799..25931,26497..26573,26713..26874,26982..27050,27362..27497,30976..31208,33649..33726,34843..34911,35296..35472,37811..38086)] [gbkey=CDS]
Sequence

ATGGTTAGTTTTTCTATCAACCAAATCAATGCAAATATGCATCAGTTTCACGCCTTGCCT
GCTCACGATATTCATGTGCTGTTTCCTACAAGAAGATGCAGCTGGAAACAAAATTACTCT
TTTTATATACCCGCTTTATCGTCGTCGTCTTGTTGCTTGCCAGTGTCTCGCCGTCAGTCG
AGTAGGTATTATTTGGGCAGATTCAAAAGACGCTTCCGTTCTGAACCTAATCTTAAAGCC
CTCACTTCCCGCATCGTTGAGCTCACTCGCCGAAGACAACTCCACCAGATATTTGAGGAA
ATTGAGATTGCGAAGAAACGACATGGGCAGTTGAACACCATTGTGATGAATGCGGTGATG
CAGGCTTGTGTTCACTGTGCTGATATAGAATCGGCCTTAAGGGTATTTGATGAAATGTCA
GGCACAGAGGGTTGTGGTGTTGATTATATCACTTATGCTACGCTTCTAAAGGGTTTGGGT
GATGCCCGAAGAATTGATCAAGCATTTGAATTACTTGAAGCTATTGAGCAAGGTACTGCT
GTTGGAAGCCCAAACCTTTCGCCACCCCTTATTAGTGGTCTGCTGAATTCCCTAATTGAA
GCAGGGGATCTACGCCGTGCTAATGGTCTTCTTGCACGATACGGCTTTGTACTTAACGAG
AGCGGATATCCATCCGTCTTGGGGTACATAAGCACAGGTTGTCCTGGGGCAGCATTAAGT
TTGCATGATGAAATACTAAGACATGGACTGAACCTGGATAAGCTCACATATAATAAACTA
ATCCTTGCATGTGTGGAGACTGGAAAGTTGGATGTTGCAATGCAGTTCTTTGAGGACATG
AAGGACAGAGGAAAAACTGTTGGTAATGATGACATTTTTCCGGATGTAGTCACCTACACT
ACGTTGCTAAAGGGTTTTGGTCATGCCCAGGATCCTCTTTCAGTTCAAAAGATTGTCATA
GAAATGAAATCATCCAACAACTTGCGTATTGATCGAGTTGCTTACACTGCAATCATTGAT
GCCTTTTTGAACTGTGGGACAATAAAAGGCGCTCTGATTGTATATGGGGAACTAGTAAAG
AGAGCTGGAGAAGATTCTTGCTTGAGGCCAAAGCCTCATCTCTTCCTTGCTCTGATGCGC
GCTTTTGCTGTTAGAGGAGAGTATGAAATGGTTAAAAAGCTGCATGGACGCATGTGGCTG
GATTCATCTGGAACAATCACCTCTAAAGTTCATGAAGAGGCTGATCATCTCCTTATGGAG
GCAGCATTGAACAATGCGCAGTTGGATTTGGCCCTACAGTACATGAAAGGCATTATTGGG
AAATGGAAGCAAATACCATGGGCTAGTCGAGGTGGAATGGTTGCTCTGCGAATTGAGGCA
TTGCTTGGTTCCAGTGTTTCTATACTTAGCCCTTGCATATTGCCAGAGCTGTCAGTACGT
GATACTATCGAGCATATCATGGTGCCATTTTCTGAAGCACGGCCACTGCAAGCTACCCTG
AAACTGACGCAAGTGGTCATGCGTTTCTTTAAGGATTTGACTGTTCCAGTCGTAGATGAT
TGGGGAAGTTGTGTTGGCATACTTCATCGTGAAGACTGCAATGAGCTGGATGCGCCACTT
TCAGCAATGATGAGAAGTCCACCTCCTTCTGTAACAACCTCAACATCCATCGGTCGTGTT
ATTGATCTAATGCTAGAGAAGAGGTACAAAATGGTTATTGTAGCAAAATATGAAAATGTG
CGCGGAATGTTTTACAGCTCCAGTGTAAGGGCTGTCGGAGTTTTTACATCTGAACAGCTA
TATAAGCTTGCTCCAACTTCATCAGAGCTAGCCGTTCAAAATTCTTCTGCCTGTAGGGAA
CCTATTGAAATTTATAGATAG

Peptide Sequence

PEP ID

XP_016505916.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At5g10690-like isoform X2 [Nicotiana tabacum]
Sequence

MVSFSINQINANMHQFHALPAHDIHVLFPTRRCSWKQNYSFYIPALSSSSCCLPVSRRQS
SRYYLGRFKRRFRSEPNLKALTSRIVELTRRRQLHQIFEEIEIAKKRHGQLNTIVMNAVM
QACVHCADIESALRVFDEMSGTEGCGVDYITYATLLKGLGDARRIDQAFELLEAIEQGTA
VGSPNLSPPLISGLLNSLIEAGDLRRANGLLARYGFVLNESGYPSVLGYISTGCPGAALS
LHDEILRHGLNLDKLTYNKLILACVETGKLDVAMQFFEDMKDRGKTVGNDDIFPDVVTYT
TLLKGFGHAQDPLSVQKIVIEMKSSNNLRIDRVAYTAIIDAFLNCGTIKGALIVYGELVK
RAGEDSCLRPKPHLFLALMRAFAVRGEYEMVKKLHGRMWLDSSGTITSKVHEEADHLLME
AALNNAQLDLALQYMKGIIGKWKQIPWASRGGMVALRIEALLGSSVSILSPCILPELSVR
DTIEHIMVPFSEARPLQATLKLTQVVMRFFKDLTVPVVDDWGSCVGILHREDCNELDAPL
SAMMRSPPPSVTTSTSIGRVIDLMLEKRYKMVIVAKYENVRGMFYSSSVRAVGVFTSEQL
YKLAPTSSELAVQNSSACREPIEIYR

Transcript Sequence

Gene sequence data has not been registered.